As we are working with cutting-edge technology, we need to develop our own bioinformatics tools to deal with experimental design, data analysis, and modeling. Programs will be added here as they become available.

5C Program Collection
The collection of programs used by Fraser et al., 2009.

The code for Rousseau et al., 2011.

Galaxy 5C Tools
A collection of 5C analysis tools (with Galaxy tool XML integration) developed for Fraser et al., 2012.
Requires: Torrent Mapping Alignment Program (TMAP)